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Chlamydia nucleic acid detection by sequence-specific probe (stool)

Published: August 9, 2026Updated: August 16, 2026

This test checks for the presence of genetic material from *Chlamydia trachomatis*, a common bacterial infection that can affect the reproductive organs, causing symptoms like abnormal discharge, pain during urination, or pelvic pain. It’s often used in screening for sexually transmitted infections (STIs).

Quick summary

["This test helps detect *Chlamydia* infection in your stool, which may indicate an infection that hasn’t caused obvious symptoms yet."]

Medically reviewed by WellAlly Editorial TeamLast reviewed August 16, 2026Editorial policy

Key facts at a glance

LOINC
35718-6
Short code
Chlamydia rRNA Nose Ql Probe
Synonyms
Chlamydia rRNA Nose Ql Probe
Category
chemistry
Sample
serum
Container
Red-top tube (SST)
Units
N/A
Fasting
false
Population
adult
Sex
all
Age range
18–65 years
Method
probe
CPT
87110
Specimen volume
5 mL
Stability
Room temperature: 4h, Refrigerated: 24h, Frozen: 7d
Hemolysis max
500
Lipemia max
1000
Icterus max
500
TAT
4–24 hours
Order
routine

Why This Test Might Be Ordered

Your healthcare provider may recommend this test if you have risk factors for *Chlamydia*, such as unprotected sexual contact with multiple partners, or if you’re experiencing symptoms like persistent diarrhea, abdominal pain, or unexplained weight loss. It’s also sometimes used in routine screening for STIs in certain high-risk groups.

How the Test Works

The test uses a molecular method to detect genetic material (DNA) from *Chlamydia* in your stool sample. A special probe matches the bacteria’s unique genetic sequence, confirming its presence if found. This method is highly sensitive and accurate for detecting *Chlamydia* infections.

Sample Collection and Preparation

You’ll need to provide a fresh stool sample collected in a sterile container. The sample is then processed in a lab to extract the genetic material, which is tested for the presence of *Chlamydia* DNA. No special preparation is needed, but avoid using toilet paper or cleaning products that might alter the sample.

What to Expect After the Test

Results are typically available within 24 to 72 hours. If the test is positive, your provider will guide you on next steps, which may include treatment with antibiotics. If negative, further testing or follow-up may be recommended depending on your symptoms and risk factors.

Clinical interpretation

How abnormal results are interpreted and what conditions they suggest.

Clinical Significance

Short name

Chlamydia stool test

Frequently asked questions

If the test is positive, *Chlamydia* infection can lead to serious complications, including chronic pelvic pain, infertility, or increased risk of other STIs. Early treatment with antibiotics can prevent these issues and reduce the risk of spreading the infection to others.
If you’re treated for *Chlamydia*, retesting is recommended 3 to 6 months later to confirm the infection has cleared. This helps ensure the treatment was effective and prevents reinfection.
A positive result means the test detected genetic material from *Chlamydia* in your stool, indicating an active infection. This requires medical attention to prevent complications and ensure you’re treated properly.
Can I get this test if I don’t have symptoms?
Yes, this test is sometimes used as a screening tool for sexually transmitted infections, especially in individuals at higher risk. Even without obvious symptoms, an infection can still be present and require treatment.
How soon after treatment should I get retested?
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This information is for educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment.

Medical Disclaimer

This content is for general informational and educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment. Always seek the guidance of a qualified healthcare provider with any questions you have about a medical condition, and never disregard professional medical advice or delay seeking it because of something you read here.

If you think you may have a medical emergency, call your local emergency number or go to the nearest emergency department immediately.

Medically reviewed by WellAlly Editorial Team Last reviewed August 16, 2026. · Read our editorial policy