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Fluoroquinolone Antibiotic Resistance Gene Detection in Nasopharyngeal Secretions by Sequencing

Published: August 9, 2026Updated: August 16, 2026

This test checks for specific genes linked to antibiotic resistance in bacteria found in your nose and throat. It helps determine if certain bacteria may not respond to fluoroquinolone antibiotics.

Quick summary

["This test helps guide treatment choices by identifying antibiotic-resistant bacteria."]

Medically reviewed by WellAlly Editorial TeamLast reviewed August 16, 2026Editorial policy

Key facts at a glance

LOINC
87716-7
Short code
FLUAV NA gene Islt-Seq
Synonyms
FLUAV NA gene Islt-Seq
Category
chemistry
Sample
serum
Container
Red-top tube (SST)
Units
N/A
Fasting
false
Population
adult
Sex
all
Age range
18–65 years
Method
sequencing
Specimen volume
5 mL
Stability
Room temperature: 4h, Refrigerated: 24h, Frozen: 7d
Hemolysis max
500
Lipemia max
1000
Icterus max
500
TAT
4–24 hours
Order
routine

What This Test Measures

The test analyzes genetic material (DNA) from bacteria present in your nasopharyngeal secretions. It specifically looks for genes that confer resistance to fluoroquinolone antibiotics, which are a class of broad-spectrum antibiotics used to treat infections like pneumonia, urinary tract infections, and certain skin infections. This genetic analysis is performed using next-generation sequencing technology, which can identify multiple genes at once.

Why It’s Done

Your healthcare provider may order this test if you have symptoms of an infection that could be caused by bacteria resistant to fluoroquinolones, or if you’ve been prescribed these antibiotics and the infection isn’t improving. It’s also used in certain clinical settings to monitor resistance patterns in bacterial populations.

Sample Collection and Preparation

A healthcare professional will collect a sample from your nose and throat using a swab. The swab is then processed to extract DNA from any bacteria present. This genetic material is then sequenced to identify antibiotic resistance genes.

How Results Are Interpreted

Results are typically reported as the presence or absence of specific resistance genes. If resistance genes are detected, it means certain bacteria in your sample may not respond to fluoroquinolone antibiotics. Your healthcare provider will use these results to adjust your treatment plan.

Clinical interpretation

How abnormal results are interpreted and what conditions they suggest.

Identifying fluoroquinolone-resistant bacteria is crucial for effective infection management. Fluoroquinolones are important antibiotics, but overuse or misuse can lead to resistance. Detecting resistance helps prevent unnecessary antibiotic use, reduces the risk of treatment failure, and supports the responsible use of antibiotics to preserve their effectiveness for future infections.

Short name

NA

Frequently asked questions

What does a positive result mean?
A positive result indicates that certain bacteria in your sample carry genes that make them resistant to fluoroquinolone antibiotics. This means these bacteria may not respond to treatment with these medications. Your healthcare provider will work with you to choose alternative antibiotics or other treatments that are more effective against the identified bacteria.
How long does it take to get results?
Results from this test can take several days to a couple of weeks, depending on the laboratory’s processing timeline and sequencing capacity. Your healthcare provider will contact you once the results are available.
Can I take antibiotics before the test?
Yes, you may take antibiotics before the test, but it’s important to inform your healthcare provider. Antibiotics can affect the bacteria present in your sample, potentially altering the results. Follow your provider’s instructions regarding timing and any necessary adjustments to your treatment plan.
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This information is for educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment.

Medical Disclaimer

This content is for general informational and educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment. Always seek the guidance of a qualified healthcare provider with any questions you have about a medical condition, and never disregard professional medical advice or delay seeking it because of something you read here.

If you think you may have a medical emergency, call your local emergency number or go to the nearest emergency department immediately.

Medically reviewed by WellAlly Editorial Team Last reviewed August 16, 2026. · Read our editorial policy