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Microbiome RNA Complex Profile (16S rRNA Gene Amplicon Sequencing)

Published: August 9, 2026Updated: August 16, 2026

This test analyzes genetic material (RNA) from bacteria in your body to assess the diversity and presence of microbial communities, often used to evaluate gut health or infections.

Quick summary

["This test helps doctors understand your body’s microbial balance, which may affect digestion, immunity, or infections."]

Medically reviewed by WellAlly Editorial TeamLast reviewed August 16, 2026Editorial policy

Key facts at a glance

LOINC
20463-6
Short code
M avium Cmplx rRNA Spec Ql NAA+probe
Synonyms
M avium Cmplx rRNA Spec Ql NAA+probe
Category
chemistry
Sample
serum
Container
Red-top tube (SST)
Units
N/A
Fasting
false
Population
adult
Sex
all
Age range
18–65 years
Method
probe-amp-tar
Specimen volume
5 mL
Stability
Room temperature: 4h, Refrigerated: 24h, Frozen: 7d
Hemolysis max
500
Lipemia max
1000
Icterus max
500
TAT
4–24 hours
Order
routine

What Does This Test Measure?

The test detects and quantifies RNA sequences from bacteria in your sample. These sequences are unique to different bacterial species, allowing for identification of which microbes are present. The analysis focuses on the 16S rRNA gene, a common genetic marker in bacteria, to create a profile of your microbiome composition.

Why Might You Need This Test?

Doctors may order this test to diagnose infections, evaluate gut health (e.g., in inflammatory bowel disease), assess antibiotic effects on your microbiome, or investigate unexplained symptoms linked to microbial imbalances.

Sample Collection and Preparation

This test requires a biological sample containing bacteria, such as stool, saliva, or sometimes blood. The sample is processed to extract RNA, which is then sequenced to identify bacterial species. The lab analyzes the genetic data to generate a microbiome profile.

Common Uses in Healthcare

Results may be used to guide treatment decisions, such as adjusting antibiotics to preserve beneficial microbes, managing chronic conditions like irritable bowel syndrome, or monitoring microbial shifts after medical interventions.

Clinical interpretation

How abnormal results are interpreted and what conditions they suggest.

Microbiome RNA profiles can reveal imbalances between beneficial and harmful bacteria, which may contribute to conditions like infections, autoimmune disorders, or metabolic issues. While not all microbiome changes are harmful, they can inform personalized care plans to support gut health or infection control.

Short name

RNA Microbiome Profile

Frequently asked questions

What does a microbiome RNA profile tell me about my health?
It provides insights into the types and quantities of bacteria in your sample, helping doctors identify potential microbial imbalances or infections. This can support diagnosis or treatment adjustments but isn’t a standalone test for all health conditions.
How long does it take to get results from this test?
Results typically take 1–4 weeks, depending on the lab’s processing speed and sequencing capacity. Your healthcare provider will discuss the timeline with you before ordering the test.
Can this test replace traditional blood or stool cultures?
No, this test is different from traditional cultures. It focuses on RNA sequences to identify bacteria broadly, while cultures grow live bacteria for specific identification. Both methods complement each other in diagnosing infections.
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This information is for educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment.

Medical Disclaimer

This content is for general informational and educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment. Always seek the guidance of a qualified healthcare provider with any questions you have about a medical condition, and never disregard professional medical advice or delay seeking it because of something you read here.

If you think you may have a medical emergency, call your local emergency number or go to the nearest emergency department immediately.

Medically reviewed by WellAlly Editorial Team Last reviewed August 16, 2026. · Read our editorial policy