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SARS-CoV-2 RNA Sequencing (LNA Probe)

Published: August 9, 2026Updated: August 16, 2026

This test detects genetic material from the SARS-CoV-2 virus, the cause of COVID-19, using a specialized nucleic acid probe. It helps confirm infection by identifying viral RNA sequences.

Quick summary

["This test supports COVID-19 diagnosis by confirming the presence of the virus’s genetic material."]

Medically reviewed by WellAlly Editorial TeamLast reviewed August 16, 2026Editorial policy

Key facts at a glance

LOINC
95406-5
Short code
SARS-CoV-2 RNA Nose Ql NAA+probe
Synonyms
SARS-CoV-2 RNA Nose Ql NAA+probe
Category
chemistry
Sample
serum
Container
Red-top tube (SST)
Units
N/A
Fasting
false
Population
adult
Sex
all
Age range
18–65 years
Method
probe-amp-tar
Specimen volume
5 mL
Stability
Room temperature: 4h, Refrigerated: 24h, Frozen: 7d
Hemolysis max
500
Lipemia max
1000
Icterus max
500
TAT
4–24 hours
Order
routine

This test measures specific markers in your body that are associated with COVID-19, such as viral genetic material or antibodies, so your healthcare provider can determine whether you have a current infection or evidence of a past one.

The test analyzes a sample of your respiratory secretions (such as nasal or throat swab fluid) for the presence of SARS-CoV-2 RNA. The LNA (locked nucleic acid) probe binds specifically to unique viral genetic sequences, allowing for highly sensitive detection of the virus’s RNA. This method is used to identify active infection rather than past exposure.

The test works by collecting a small sample, usually a swab from your nose or throat or a small blood sample, which is then examined in a laboratory or with a rapid testing device to look for signs of the virus or your immune response to it.

During the test, a swab is collected from your nose or throat to gather cells and fluids containing viral RNA. The sample is then processed to extract and amplify the viral genetic material. The LNA probe targets specific viral sequences, and detection confirms whether the virus is present in your system.

This test is typically used when you have symptoms that could be caused by COVID-19, when you have been in close contact with someone who tested positive, or when you need documentation of your infection status for travel, work, school, or a medical procedure.

This test is typically ordered to diagnose active COVID-19 infection, especially when symptoms such as fever, cough, or shortness of breath are present. It may also be used in high-risk settings (e.g., healthcare facilities, long-term care) to monitor for outbreaks or in asymptomatic individuals who may have been exposed.

Before the test, your healthcare provider will explain how the sample will be collected and ask about your symptoms, recent exposures, and medical history. In most cases, no special preparation such as fasting is needed, but be sure to follow any specific instructions you are given.

No special preparation is needed. You may have a nasal or throat swab performed by a healthcare provider. The procedure is quick and generally painless. If you are taking certain medications or have allergies, let your provider know before the test.

Clinical interpretation

How abnormal results are interpreted and what conditions they suggest.

Clinical Significance

Frequently asked questions

This test plays a critical role in confirming COVID-19 infection by detecting the virus’s genetic material. Positive results indicate active infection and guide treatment decisions, such as isolation and antiviral therapies. Negative results may still be possible if the virus is present in low amounts or if testing was done too early in the infection. Results are used to inform public health measures and personal health precautions.
How long does it usually take to get the results of this test back after my sample has been collected?
Results are typically available within 24 to 72 hours, depending on the laboratory’s processing time. Your healthcare provider will contact you with the results once they are ready.
Can this test detect a COVID-19 infection that I had in the past, even if I have fully recovered and no longer have any symptoms?
No, this test specifically detects active SARS-CoV-2 RNA, which indicates a current infection. To determine past infection, antibodies (e.g., serology tests) may be used instead.
There is minimal discomfort, as the swab is quick and typically causes mild irritation or slight discomfort. Rarely, some individuals may experience mild soreness or nasal irritation. If you experience severe symptoms, inform your healthcare provider.
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This information is for educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment.

Medical Disclaimer

This content is for general informational and educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment. Always seek the guidance of a qualified healthcare provider with any questions you have about a medical condition, and never disregard professional medical advice or delay seeking it because of something you read here.

If you think you may have a medical emergency, call your local emergency number or go to the nearest emergency department immediately.

Medically reviewed by WellAlly Editorial Team Last reviewed August 16, 2026. · Read our editorial policy