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5ohmethyluracilcsfscnc

Published: August 9, 2026Updated: August 16, 2026

This test measures the level of 5-hydroxymethyluracil, a DNA modification marker, in the cerebrospinal fluid to help assess brain cell health and certain neurological conditions.

Quick summary

{"Measures 5-hmU levels in cerebrospinal fluid collected via lumbar puncture","Helps doctors study DNA processes and cell health in the brain","May aid in detecting certain neurological or brain disorders","Results provide information about brain cell function and turnover","The test is typically ordered by specialists for specific clinical questions"}

Medically reviewed by WellAlly Editorial TeamLast reviewed August 16, 2026Editorial policy

Key facts at a glance

LOINC
79686-2
Short code
5-HmU CSF
Synonyms
5OH-methyluracil CSF-sCnc
Category
chemistry
Sample
csf
Container
Sterile polypropylene cryovial
Units
N/A
Fasting
false
Population
adult
Sex
all
Age range
≥ 18 years
Method
Liquid chromatography-tandem mass spectrometry (LC-MS/MS)
CPT
83789
SNOMED
122569004
Specimen volume
0.5-1.0 mL CSF
Stability
Store at -80°C; avoid repeated freeze-thaw cycles
Hemolysis max
200
TAT
72–168 hours
Order
routine

What is this test?

The 5-hydroxymethyluracil (5-hmU) test measures the amount of 5-hmU in your cerebrospinal fluid (CSF). 5-hmU is a modified form of DNA that appears during normal DNA processing in cells. It is produced when the body actively modifies DNA, particularly during processes related to gene regulation and cell function. This test uses a sample of CSF, the clear fluid that surrounds and cushions your brain and spinal cord.

Why is this test performed?

This test is usually ordered by neurologists or other specialists to better understand DNA-related processes in the brain. It may be used in research settings or clinical evaluation to: study how brain cells function and regenerate; investigate certain neurological conditions; and help identify patterns of brain cell activity. Your doctor may recommend this test if they need detailed information about biological processes happening in your central nervous system.

How is the test performed?

The test requires a sample of cerebrospinal fluid, which is collected through a procedure called a lumbar puncture (spinal tap). During this procedure, a healthcare provider inserts a thin needle between the bones in your lower spine to withdraw a small amount of CSF. The sample is then sent to a laboratory where specialized equipment measures the 5-hmU levels. The procedure is generally safe and takes only a few minutes, though you may need to lie flat for a short time afterward.

What do the results mean?

Results from this test are interpreted by your doctor in the context of your overall health, symptoms, and other test results. Abnormal levels of 5-hmU in CSF may indicate changes in brain cell function or turnover. Your doctor will explain what your specific results mean and how they relate to your individual health situation. This test is often used alongside other neurological assessments to form a complete picture of your brain health.

Reference range

Reference range not established; results interpreted in clinical contextN/A

Specimen: csf

No specific preparation required. Standard CSF collection precautions apply.

Clinical interpretation

How abnormal results are interpreted and what conditions they suggest.

◆Associated findings1

Frequently asked questions

Is the lumbar puncture procedure painful?
A lumbar puncture is performed with local anesthesia, so you may feel a brief sting during the injection. You may feel some pressure or mild discomfort during the needle insertion, but the procedure is generally well-tolerated. Most patients can resume normal activities within 24 hours, though your doctor may recommend rest.
How long does it take to get results?
Results typically take several days to a week, as the test requires specialized laboratory analysis. Your doctor's office will contact you with the results or discuss them at a follow-up appointment.
Do I need to fast before this test?
No special preparation, such as fasting, is usually required for this test. However, follow any specific instructions provided by your healthcare provider.
Are there risks associated with this test?
The main risk is a post-lumbar puncture headache, which occurs in some patients. This headache typically improves when lying flat and may last a few days. Serious complications are rare. Contact your doctor if you experience severe headache, fever, or unusual symptoms after the procedure.
Will I need other tests alongside this one?
Your doctor may order additional CSF tests, blood tests, or imaging studies (like MRI or CT scans) to get a complete picture of your neurological health. This comprehensive approach helps in making an accurate diagnosis or assessment.
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This information is for educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment.

Medical Disclaimer

This content is for general informational and educational purposes only and is not a substitute for professional medical advice, diagnosis, or treatment. Always seek the guidance of a qualified healthcare provider with any questions you have about a medical condition, and never disregard professional medical advice or delay seeking it because of something you read here.

If you think you may have a medical emergency, call your local emergency number or go to the nearest emergency department immediately.

Medically reviewed by WellAlly Editorial Team Last reviewed August 16, 2026. · Read our editorial policy